The United States Department of Energy (DOE) Office of Nuclear Energy is applying knowledge and understanding in the areas of systems level engineering, analysis, and decision making to better inform the waste management pathways for U.S. spent nuclear fuel (SNF). Currently there are 93 operating and 23 shutdown commercial nuclear reactors in the United States. SNF at most of these locations is being stored in spent fuel pools, dry storage, or both [1, 2]. This paper initially goes over the basics of the agent-based simulation tool known as the Next Generation System Analysis Model (NGSAM) that has the capability to model interaction and movements of individual components or groups like casks, railcars etc. The next section covers some of the methods implemented in the Java Transportation Operations Model (JTOM) to facilitate the movement of assemblies, casks, railcars etc. and the various intermodal transfer options. This section also covers the current cask loading and intermodal transfer times implemented in NGSAM. The last section goes over the proposed values for intermodal transportation, and cask transfer/loading operations.